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  5. Warth B, Raffeiner P, Granados A, Huan T, Fang M, Forsberg EM, Benton HP, Goetz L, Johnson CH, & Siuzdak G (2018) Metabolomics Reveals that Dietary Xenoestrogens Alter Cellular Metabolism Induced by Palbociclib/Letrozole Combination Cancer Therapy. Cell Chem Biol.
  6. Mayer RL, Schwarzmeier JD, Gerner MC, Bileck A, Mader JC, Meier-Menches SM, Gerner SM, Schmetterer KG, Pukrop T, Reichle A, Slany A, & Gerner C (2018) Proteomics and metabolomics identify molecular mechanisms of aging potentially predisposing for chronic lymphocytic leukemia. Mol Cell Proteomics 17(2):290-303.
  7. Jain A, Roustan V, Weckwerth W, & Ebersberger I (2018) Studying AMPK in an Evolutionary Context. Methods Mol Biol 1732:111-142.
  8. Ghatak A, Chaturvedi P, & Weckwerth W (2018) Metabolomics in Plant Stress Physiology. Adv Biochem Eng Biotechnol.
  9. Varshney RK et al. (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nat Biotechnol 35(10):969-976.
  10. Schwaiger M, Rampler E, Hermann G, Miklos W, Berger W, & Koellensperger G (2017) Anion-Exchange Chromatography Coupled to High-Resolution Mass Spectrometry: A Powerful Tool for Merging Targeted and Non-targeted Metabolomics.http://pubs.acs.org/doi/abs/10.1021/acs.analchem.7b01624 Anal Chem 89(14):7667-7674.
  11. Leitner M,  Fragner L,  Danner S,  Holeschofsky N,  Leitner K,  Tischler S,  Doerfler H,  Bachmann G,  Sun X,  Jaeger W,  Kautzky-Willer A,  Weckwerth W (2017) Combined Metabolomic Analysis of Plasma and Urine Reveals AHBA, Tryptophan and Serotonin Metabolism as Potential Risk Factors in Gestational Diabetes Mellitus (GDM). Front Mol Biosci. 2017; 4: 84.
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  12. Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ, Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.   Front. Pharmacol., 05 October 2017
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  13. Kerou, M., Offre, P., Valledor, L., Abby, S. S., Melcher, M., Nagler, M., Weckwerth, W.,Schleper, C. (2016).  Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.  Proc Natl Acad Sci U S A 113, E7937-E46.
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  15. Rampler E, Coman C, Hermann G, Sickmann A, Ahrends R, & Koellensperger G (2017) LILY-lipidome isotope labeling of yeast: in vivo synthesis of (13)C labeled reference lipids for quantification by mass spectrometry. Analyst 142(11):1891-1899.
  16. Poschner S, Maier-Salamon A, Zehl M, Wackerlig J, Dobusch D, Pachmann B, Sterlini KL, & Jager W (2017) The Impacts of Genistein and Daidzein on Estrogen Conjugations in Human Breast Cancer Cells: A Targeted Metabolomics Approach. Front Pharmacol 8:699.
  17. Pascual J, Canal MJ, Escandon M, Meijon M, Weckwerth W, & Valledor L (2017) Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms in Pinus radiata. Mol Cell Proteomics 16(3):485-501.
  18. Ott E, Kawaguchi Y, Kolbl D, Chaturvedi P, Nakagawa K, Yamagishi A, Weckwerth W, & Milojevic T (2017) https://www.google.at/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&cad=rja&uact=8&ved=0ahUKEwi0pZ-O2ubZAhXF1qQKHfKbDEEQFggoMAA&url=http%3A%2F%2Fjournals.plos.org%2Fplosone%2Farticle%3Fid%3D10.1371%2Fjournal.pone.0189381&usg=AOvVaw2E5ZQWxBwfY9beyba6Qm97Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission. Plos One 12(12):e0189381.
  19. Linke M et al. (2017) Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression. Nature immunology 18(3):293-302.
  20. Hoermiller, II, Naegele T, Augustin H, Stutz S, Weckwerth W, & Heyer AG (2017) Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana. Plant Cell Environ 40(5):602-610.
  21. Ghatak A, Chaturvedi P, Paul P, Agrawal GK, Rakwal R, Kim ST, Weckwerth W, & Gupta R (2017) Proteomics survey of Solanaceae family: Current status and challenges ahead. J Proteomics 169:41-57.
  22. Duszka K, Oresic M, Le May C, Konig J, & Wahli W (2017) PPARgamma Modulates Long Chain Fatty Acid Processing in the Intestinal Epithelium. Int J Mol Sci 18(12).
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  23. Wang L, Nagele T, Doerfler H, Fragner L, Chaturvedi P, Nukarinen E, Bellaire A, Huber W, Weiszmann J, Engelmeier D, Ramsak Z, Gruden K, & Weckwerth W (2016) System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance. Plant J 87(3):318-332.
  24. Tosevska A, Moelzer C, Wallner M, Janosec M, Schwarz U, Kern C, Marculescu R, Doberer D, Weckwerth W, & Wagner KH (2016) Longer telomeres in chronic, moderate, unconjugated hyperbilirubinaemia: insights from a human study on Gilbert's Syndrome. Scientific reports 6:22300.
  25. Roustan V, Jain A, Teige M, Ebersberger I, & Weckwerth W (2016) An evolutionary perspective of AMPK-TOR signaling in the three domains of life. J Exp Bot 67(13):3897-3907.
  26. Prezelj N, Covington E, Roitsch T, Gruden K, Fragner L, Weckwerth W, Chersicola M, Vodopivec M, & Dermastia M (2016) Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Doree Phytoplasma. Front Plant Sci 7:711.
  27. Pascual J, Alegre S, Nagler M, Escandon M, Annacondia ML, Weckwerth W, Valledor L, & Canal MJ (2016) The variations in the nuclear proteome reveal new transcription factors and mechanisms involved in UV stress response in Pinus radiata.https://www.ncbi.nlm.nih.gov/pubmed/26961940 J Proteomics 143:390-400.
  28. Nukarinen E, Nagele T, Pedrotti L, Wurzinger B, Mair A, Landgraf R, Bornke F, Hanson J, Teige M, Baena-Gonzalez E, Droge-Laser W, & Weckwerth W (2016) Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation. Scientific reports 6:31697.
  29. Kogovsek P, Pompe-Novak M, Petek M, Fragner L, Weckwerth W, & Gruden K (2016) Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection.https://www.ncbi.nlm.nih.gov/pubmed/26727123 Plos One 11(1):e0146135.
  30. Ghatak A, Chaturvedi P, Nagler M, Roustan V, Lyon D, Bachmann G, Postl W, Schrofl A, Desai N, Varshney RK, & Weckwerth W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). J Proteomics 143:122-135.
  31. Furuhashi T, Nakamura T, Fragner L, Roustan V, Schon V, & Weckwerth W (2016) Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis.https://www.ncbi.nlm.nih.gov/pubmed/27440175 Biotechnol J 11(10):1262-1267.
  32. Furtauer L & Nagele T (2016) Approximating the stabilization of cellular metabolism by compartmentalization. Theory Biosci 135(1-2):73-87.
  33. Nagele T, Furtauer L, Nagler M, Weiszmann J, & Weckwerth W (2016) A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information.  Front Mol Biosci 3:6.
  34. Chaturvedi P, Ghatak A, & Weckwerth W (2016) Pollen proteomics: from stress physiology to developmental priming. Plant Reprod 29(1-2):119-132.
  35. Schuster R, Holzer W, Doerfler H, Weckwerth W, Viernstein H, Okonogi S, & Mueller M (2016) Cajanus cajan–a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects. Food & Function. 7 (9), 3798-3806
  36. Wang L, Fu J, Li M, Fragner L, Weckwerth W, & Yang P (2016) Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera).   Front Plant Sci 7:750.
  37. Meijon M, Feito I, Oravec M, Delatorre C, Weckwerth W, Majada J, & Valledor L (2016) Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites?  Mol Ecol 25(4):959-976.
  38. Kawakatsu T et al. (2016) Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell 166(2):492-505.
  39. Genomes Consortium. Electronic address mngoaa & Genomes C (2016) 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell.166(2):481-491
  40. Alegre S, Pascual J, Nagler M, Weckwerth W, Canal MJ, & Valledor L (2016) Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles. Data Brief 7:1477-1482.
  41. Stare T, Ramsak Z, Blejec A, Stare K, Turnsek N, Weckwerth W, Wienkoop S, Vodnik D, & Gruden K (2015) Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction. BMC Genomics 16:716.
  42. Sun X, Langer B, & Weckwerth W (2015) Challenges of Inversely Estimating Jacobian from Metabolomics Data. Frontiers in bioengineering and biotechnology 3:188.
  43. Nagler M, Nukarinen E, Weckwerth W, & Nagele T (2015) Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana. BMC Plant Biol 15:284.
  44. Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nagele T, Vicente Carbajosa J, Hanson J, Baena-Gonzalez E, Chaban C, Weckwerth W, Droge-Laser W, & Teige M (2015) SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.  Elife 4.