Related Publications


  1. Kerou, M., Offre, P., Valledor, L., Abby, S. S., Melcher, M., Nagler, M., Weckwerth, W.,Schleper, C. (2016). Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers. Proc Natl Acad Sci U S A 113, E7937-E46.
  2. Linke, M., Pham, H. T., Katholnig, K., Schnoller, T., Miller, A., Demel, F., Schutz, B., Rosner, M., Kovacic, B., Sukhbaatar, N., Niederreiter, B., Bluml, S., Kuess, P., Sexl, V., Muller, M., Mikula, M., Weckwerth, W., Haschemi, A., Susani, M., Hengstschlager, M., Gambello, M. J.,Weichhart, T. (2017). Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression. Nat Immunol.
  3. Schuster R, Holzer W, Doerfler H, Weckwerth W, Viernstein H, Okonogi S, & Mueller M (2016) Cajanus cajan–a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects. Food & Function. 7 (9), 3798-3806

  5. Tosevska A, Moelzer C, Wallner M, Janosec M, Schwarz U, Kern C, Marculescu R, Doberer D, Weckwerth W, & Wagner KH (2016) Longer telomeres in chronic, moderate, unconjugated hyperbilirubinaemia: insights from a human study on Gilbert's Syndrome. Scientific reports 6:22300.

  7. Wang L, Nagele T, Doerfler H, Fragner L, Chaturvedi P, Nukarinen E, Bellaire A, Huber W, Weiszmann J, Engelmeier D, Ramsak Z, Gruden K, & Weckwerth W (2016) System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance. Plant J 87(3):318-332.
  8. Wang L, Fu J, Li M, Fragner L, Weckwerth W, & Yang P (2016) Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). Front Plant Sci 7:750.
  9. Roustan V, Jain A, Teige M, Ebersberger I, & Weckwerth W (2016) An evolutionary perspective of AMPK-TOR signaling in the three domains of life. J Exp Bot. 67 (13): 3897-3907
  10. Prezelj N, Covington E, Roitsch T, Gruden K, Fragner L, Weckwerth W, Chersicola M, Vodopivec M, & Dermastia M (2016) Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Doree Phytoplasma. Front Plant Sci 7:711.
  11. Pascual J, Alegre S, Nagler M, Escandon M, Annacondia ML, Weckwerth W, Valledor L, & Canal MJ (2016) The variations in the nuclear proteome reveal new transcription factors and mechanisms involved in UV stress response in Pinus radiata. J Proteomics 143:390-400.
  12. Nukarinen E, Nagele T, Pedrotti L, Wurzinger B, Mair A, Landgraf R, Bornke F, Hanson J, Teige M, Baena-Gonzalez E, Droge-Laser W, & Weckwerth W (2016) Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation. Scientific reports 6:31697.
  13. Nagele T, Furtauer L, Nagler M, Weiszmann J, & Weckwerth W (2016) A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information. Front Mol Biosci 3:6.
  14. Meijon M, Feito I, Oravec M, Delatorre C, Weckwerth W, Majada J, & Valledor L (2016) Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites? Mol Ecol 25(4):959-976.
  15. Kogovsek P, Pompe-Novak M, Petek M, Fragner L, Weckwerth W, & Gruden K (2016) Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection. Plos One 11(1):e0146135.
  16. Kawakatsu T, Huang SS, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, Becker C, O'Neil R, O'Malley RC, Quarless DX, Genomes C, Schork NJ, Weigel D, Nordborg M, & Ecker JR (2016) Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell 166(2):492-505.
  17. Hoermiller, II, Naegele T, Augustin H, Stutz S, Weckwerth W, & Heyer AG (2016) Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana. Plant Cell Environ.
  18. Ghatak A, Chaturvedi P, Nagler M, Roustan V, Lyon D, Bachmann G, Postl W, Schrofl A, Desai N, Varshney RK, & Weckwerth W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). J Proteomics 143:122-135.
  19. Genomes Consortium. Electronic address mngoaa & Genomes C (2016) 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell.166(2):481-491
  20. Furuhashi T, Nakamura T, Fragner L, Roustan V, Schon V, & Weckwerth W (2016) Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis. Biotechnol J 11(10):1262-1267.
  21. Furtauer L & Nagele T (2016) Approximating the stabilization of cellular metabolism by compartmentalization. Theory Biosci 135(1-2):73-87.
  22. Chaturvedi P, Ghatak A, & Weckwerth W (2016) Pollen proteomics: from stress physiology to developmental priming. Plant Reprod 29(1-2):119-132.
  23. Alegre S, Pascual J, Nagler M, Weckwerth W, Canal MJ, & Valledor L (2016) Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles. Data Brief 7:1477-1482.
  24. Sun X, Langer B, & Weckwerth W (2015) Challenges of Inversely Estimating Jacobian from Metabolomics Data. Frontiers in bioengineering and biotechnology 3:188.
  25. Stare T, Ramsak Z, Blejec A, Stare K, Turnsek N, Weckwerth W, Wienkoop S, Vodnik D, & Gruden K (2015) Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction. BMC Genomics 16:716.
  26. Nagler M, Nukarinen E, Weckwerth W, & Nagele T (2015) Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana. BMC Plant Biol 15:284.
  27. Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nagele T, Vicente Carbajosa J, Hanson J, Baena-Gonzalez E, Chaban C, Weckwerth W, Droge-Laser W, & Teige M (2015) SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife 4.