Related Publications

  1. Anion-exchange chromatography coupled to high resolution mass spectrometry: a powerful tool for merging targeted and non-targeted metabolomics. Schwaiger M, Rampler E, Hermann G, Miklos W, Berger W, Koellensperger Anal. Chem. 2017 June 5.

  2. LILY-lipidome isotope labeling of yeast: in vivo synthesis of 13C labeled reference lipids for quantification by mass spectrometry. Rampler E, Coman C, Hermann G, Sickmann A, Ahrends R, Koellensperger G. Analyst. 2017 May 5.

  3. Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers. Kerou, M., Offre, P., Valledor, L., Abby, S. S., Melcher, M., Nagler, M., Weckwerth, W.,Schleper, C. (2016).  Proc Natl Acad Sci U S A 113, E7937-E46.
  4. Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression. Linke M, Pham HT, Katholnig K, Schnöller T, Miller A, Demel F, Schütz B, Rosner M, Kovacic B, Sukhbaatar N, Niederreiter B, Blüml S, Kuess P, Sexl V, Müller M, Mikula M, Weckwerth W, Haschemi A, Susani M, Hengstschläger M, Gambello MJ, Weichhart T. Nat Immunol. 2017 Mar;18(3):293-302.

  5. Cajanus cajan–a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects. Schuster R, Holzer W, Doerfler H, Weckwerth W, Viernstein H, Okonogi S, & Mueller M (2016) Food & Function. 7 (9), 3798-3806
  6. Longer telomeres in chronic, moderate, unconjugated hyperbilirubinaemia: insights from a human study on Gilbert's Syndrome. Tosevska A, Moelzer C, Wallner M, Janosec M, Schwarz U, Kern C, Marculescu R, Doberer D, Weckwerth W, Wagner KH. Sci Rep. 2016 Mar 1;6:22300.

  7. System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance. Wang L, Nägele T, Doerfler H, Fragner L, Chaturvedi P, Nukarinen E, Bellaire A, Huber W, Weiszmann J, Engelmeier D, Ramsak Z, Gruden K, Weckwerth W. Plant J. 2016 Aug;87(3):318-32.

  8. Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). Wang L, Fu J, Li M, Fragner L, Weckwerth W, & Yang P (2016)  Front Plant Sci 7:750.
  9. An evolutionary perspective of AMPK-TOR signaling in the three domains of life. Roustan V, Jain A, Teige M, Ebersberger I, Weckwerth W. J Exp Bot. 2016 Jun;67(13):3897-907.

  10. Proteomics survey of Solanaceae family: Current status and challenges ahead. Ghatak A, Chaturvedi P, Paul P, Agrawal GK, Rakwal R, Kim ST, Weckwerth W, Gupta R. J Proteomics. 2017 May 18.

  11. Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms in Pinus radiata. Pascual J, Cañal MJ, Escandón M, Meijón M, Weckwerth W, Valledor L. Mol Cell Proteomics. 2017 Mar;16(3):485-501.
  12. Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Dorée Phytoplasma. Prezelj N, Covington E, Roitsch T, Gruden K, Fragner L, Weckwerth W, Chersicola M, Vodopivec M, Dermastia M. Front Plant Sci. 2016 May 23;7:711.

  13. The variations in the nuclear proteome reveal new transcription factors and mechanisms involved in UV stress response in Pinus radiata. Pascual J, Alegre S, Nagler M, Escandón M, Annacondia ML, Weckwerth W, Valledor L, Cañal MJ. J Proteomics. 2016 Jun 30;143:390-400.

  14. Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation. Nukarinen E, Nägele T, Pedrotti L, Wurzinger B, Mair A, Landgraf R, Börnke F, Hanson J, Teige M, Baena-Gonzalez E, Dröge-Laser W, Weckwerth W. Sci Rep. 2016 Aug 22;6:31697.

  15. A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information. Nagele T, Furtauer L, Nagler M, Weiszmann J, & Weckwerth W (2016)  Front Mol Biosci 3:6.
  16. Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites? Meijon M, Feito I, Oravec M, Delatorre C, Weckwerth W, Majada J, & Valledor L (2016)  Mol Ecol 25(4):959-976.
  17. Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection. Kogovšek P, Pompe-Novak M, Petek M, Fragner L, Weckwerth W, Gruden K. PLoS One. 2016 Jan 4;11(1):e0146135.

  18. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Kawakatsu T, Huang SS, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, Becker C, O'Neil R, O'Malley RC, Quarless DX, Genomes C, Schork NJ, Weigel D, Nordborg M, & Ecker JR (2016) Cell 166(2):492-505.
  19. Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana. Hoermiller II, Naegele T, Augustin H, Stutz S, Weckwerth W, Heyer AG. Plant Cell Environ. 2017 May;40(5):602-610.

  20. Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Ghatak A, Chaturvedi P, Nagler M, Roustan V, Lyon D, Bachmann G, Postl W, Schröfl A, Desai N, Varshney RK, Weckwerth W. J Proteomics. 2016

  21. 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Genomes Consortium. Electronic address mngoaa & Genomes C (2016)  Cell.166(2):481-491
  22. Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis. Furuhashi T, Nakamura T, Fragner L, Roustan V, Schön V, Weckwerth W. Biotechnol J. 2016 Oct;11(10):1262-1267.

  23. Approximating the stabilization of cellular metabolism by compartmentalization. Fürtauer L, Nägele T. Theory Biosci. 2016 Jun;135(1-2):73-87.

  24. Pollen proteomics: from stress physiology to developmental priming. Chaturvedi P, Ghatak A, Weckwerth W. Plant Reprod. 2016 Jun;29(1-2):119-32.

  25. Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles.  Alegre S, Pascual J, Nagler M, Weckwerth W, Cañal MJ, Valledor L. Data Brief. 2016 Apr 7;7:1477-82.

  26. Challenges of Inversely Estimating Jacobian from Metabolomics Data. Sun X, Länger B, Weckwerth W.  Front Bioeng Biotechnol. 2015 Nov 18;3:188.

  27. Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction. Stare T, Ramsak Z, Blejec A, Stare K, Turnsek N, Weckwerth W, Wienkoop S, Vodnik D, & Gruden K (2015)  BMC Genomics 16:716.
  28. Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana. Nagler M, Nukarinen E, Weckwerth W, Nägele T. BMC Plant Biol. 2015 Dec 1;15:284.

  29. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nagele T, Vicente Carbajosa J, Hanson J, Baena-Gonzalez E, Chaban C, Weckwerth W, Droge-Laser W, & Teige M (2015)  Elife 4.
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